WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F7.2b.2 Sequence Name  T27F7.2b.2
Length (nt)  1889   Chromosome Location  II: 4972854-4988727
Chromosome . Primary Identifier  II Chromosome Location . Start  4972854
Chromosome Location . End  4988727 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F7.2b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020867 shc-2 T27F7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F7.2b T27F7.2b 1887   II: 4972856-4972959

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F7.2b.2 4972854 4988727 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon48964   106   II: 4972854-4972959 Caenorhabditis elegans
Exon48969   340   II: 4973692-4974031 Caenorhabditis elegans
Exon48973   144   II: 4975678-4975821 Caenorhabditis elegans
Exon48977   147   II: 4978397-4978543 Caenorhabditis elegans
Exon48980   90   II: 4983479-4983568 Caenorhabditis elegans
Exon48984   122   II: 4985073-4985194 Caenorhabditis elegans
Exon48989   82   II: 4986117-4986198 Caenorhabditis elegans
Exon48994   326   II: 4987042-4987367 Caenorhabditis elegans
Exon48999   172   II: 4987622-4987793 Caenorhabditis elegans
Exon49004   192   II: 4987845-4988036 Caenorhabditis elegans
Exon49007   168   II: 4988560-4988727 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F7.2b.2 4972854 4988727 1

1 Sequence

Length
1889

1 Sequence Ontology Term

Identifier Name Description
transcript