WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F59A6.1a.1 Sequence Name  F59A6.1a.1
Length (nt)  5061   Chromosome Location  II: 5022757-5029999
Chromosome . Primary Identifier  II Chromosome Location . Start  5022757
Chromosome Location . End  5029999 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F59A6.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003822 nsy-1 F59A6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F59A6.1a F59A6.1a 4497   II: 5022914-5022967

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F59A6.1a.1 5022757 5029999 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49117   211   II: 5022757-5022967 Caenorhabditis elegans
Exon49120   243   II: 5023694-5023936 Caenorhabditis elegans
Exon49122   288   II: 5024164-5024451 Caenorhabditis elegans
Exon49124   395   II: 5024499-5024893 Caenorhabditis elegans
Exon49126   119   II: 5024943-5025061 Caenorhabditis elegans
Exon49128   778   II: 5025501-5026278 Caenorhabditis elegans
Exon49130   915   II: 5026325-5027239 Caenorhabditis elegans
Exon49132   781   II: 5027555-5028335 Caenorhabditis elegans
Exon49134   746   II: 5028398-5029143 Caenorhabditis elegans
Exon49137   585   II: 5029415-5029999 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F59A6.1a.1 5022757 5029999 1

1 Sequence

Length
5061

1 Sequence Ontology Term

Identifier Name Description
transcript