WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F58A6.4.1 Sequence Name  F58A6.4.1
Length (nt)  2003   Chromosome Location  II: 5138519-5142036
Chromosome . Primary Identifier  II Chromosome Location . Start  5138519
Chromosome Location . End  5142036 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F58A6.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003547 nas-29 F58A6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F58A6.4 F58A6.4 1599   II: 5138696-5138820

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F58A6.4.1 5138519 5142036 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49390   302   II: 5138519-5138820 Caenorhabditis elegans
Exon49391   113   II: 5138864-5138976 Caenorhabditis elegans
Exon49392   122   II: 5139362-5139483 Caenorhabditis elegans
Exon49393   75   II: 5139534-5139608 Caenorhabditis elegans
Exon49394   158   II: 5139660-5139817 Caenorhabditis elegans
Exon49395   128   II: 5139876-5140003 Caenorhabditis elegans
Exon49396   74   II: 5140050-5140123 Caenorhabditis elegans
Exon49397   132   II: 5140263-5140394 Caenorhabditis elegans
Exon49398   102   II: 5140444-5140545 Caenorhabditis elegans
Exon49399   92   II: 5140593-5140684 Caenorhabditis elegans
Exon49400   221   II: 5140829-5141049 Caenorhabditis elegans
Exon49401   68   II: 5141178-5141245 Caenorhabditis elegans
Exon49402   96   II: 5141295-5141390 Caenorhabditis elegans
Exon49403   320   II: 5141717-5142036 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F58A6.4.1 5138519 5142036 -1

1 Sequence

Length
2003

1 Sequence Ontology Term

Identifier Name Description
transcript