WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27D6.1.1 Sequence Name  C27D6.1.1
Length (nt)  2097   Chromosome Location  II: 5172751-5177440
Chromosome . Primary Identifier  II Chromosome Location . Start  5172751
Chromosome Location . End  5177440 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27D6.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016160 C27D6.1 C27D6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27D6.1 C27D6.1 1938   II: 5172751-5172805

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27D6.1.1 5172751 5177440 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49466   55   II: 5172751-5172805 Caenorhabditis elegans
Exon49467   98   II: 5172850-5172947 Caenorhabditis elegans
Exon49468   81   II: 5172997-5173077 Caenorhabditis elegans
Exon49469   504   II: 5173126-5173629 Caenorhabditis elegans
Exon49475   105   II: 5175670-5175774 Caenorhabditis elegans
Exon49476   531   II: 5175829-5176359 Caenorhabditis elegans
Exon49477   120   II: 5176406-5176525 Caenorhabditis elegans
Exon49478   123   II: 5176580-5176702 Caenorhabditis elegans
Exon49479   114   II: 5176746-5176859 Caenorhabditis elegans
Exon49480   366   II: 5177075-5177440 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27D6.1.1 5172751 5177440 1

1 Sequence

Length
2097

1 Sequence Ontology Term

Identifier Name Description
transcript