WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34F11.3a.1 Sequence Name  C34F11.3a.1
Length (nt)  2495   Chromosome Location  II: 5203322-5209801
Chromosome . Primary Identifier  II Chromosome Location . Start  5203322
Chromosome Location . End  5209801 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34F11.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016415 ampd-1 C34F11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.3a C34F11.3a 2355   II: 5203327-5203416

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3a.1 5203322 5209801 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49527   95   II: 5203322-5203416 Caenorhabditis elegans
Exon49529   46   II: 5203463-5203508 Caenorhabditis elegans
Exon49538   53   II: 5204788-5204840 Caenorhabditis elegans
Exon49542   104   II: 5204888-5204991 Caenorhabditis elegans
Exon49548   123   II: 5206578-5206700 Caenorhabditis elegans
Exon49552   230   II: 5206755-5206984 Caenorhabditis elegans
Exon49558   110   II: 5207667-5207776 Caenorhabditis elegans
Exon49562   119   II: 5207825-5207943 Caenorhabditis elegans
Exon49566   621   II: 5207990-5208610 Caenorhabditis elegans
Exon49570   178   II: 5208660-5208837 Caenorhabditis elegans
Exon49574   519   II: 5208929-5209447 Caenorhabditis elegans
Exon49582   297   II: 5209505-5209801 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3a.1 5203322 5209801 1

1 Sequence

Length
2495

1 Sequence Ontology Term

Identifier Name Description
transcript