WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34F11.3c.1 Sequence Name  C34F11.3c.1
Length (nt)  2682   Chromosome Location  II: 5203322-5209799
Chromosome . Primary Identifier  II Chromosome Location . Start  5203322
Chromosome Location . End  5209799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34F11.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016415 ampd-1 C34F11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.3c C34F11.3c 2544   II: 5203327-5203416

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3c.1 5203322 5209799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49533   95   II: 5203322-5203416 Caenorhabditis elegans
Exon49538   46   II: 5203463-5203508 Caenorhabditis elegans
Exon49547   53   II: 5204788-5204840 Caenorhabditis elegans
Exon49551   104   II: 5204888-5204991 Caenorhabditis elegans
Exon49554   189   II: 5205444-5205632 Caenorhabditis elegans
Exon49557   123   II: 5206578-5206700 Caenorhabditis elegans
Exon49561   230   II: 5206755-5206984 Caenorhabditis elegans
Exon49567   110   II: 5207667-5207776 Caenorhabditis elegans
Exon49571   119   II: 5207825-5207943 Caenorhabditis elegans
Exon49575   621   II: 5207990-5208610 Caenorhabditis elegans
Exon49579   178   II: 5208660-5208837 Caenorhabditis elegans
Exon49583   519   II: 5208929-5209447 Caenorhabditis elegans
Exon49588   295   II: 5209505-5209799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3c.1 5203322 5209799 1

1 Sequence

Length
2682

1 Sequence Ontology Term

Identifier Name Description
transcript