WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201505 Gene Name  C34F11.17
Sequence Name  ? C34F11.17 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 121
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201505

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C34F11.17 C34F11.17 121   II: 5226524-5226644
 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk963801
gk963053
WBVar01719701
gk632559

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00201505 5226524 5226644 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts of noncoding genes that showed significantly increased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_enriched_noncoding-RNA
Microgravity simulation using a desktop RPM from hatching to L4 larva. Genes that showed significantly increased expression by microgravity simulation using a desktop RPM, from hatching to L4 larva stage. Transcriptome Analysis Console version 3.0 software (Affymetrix, CA, USA) for differential gene expression analysis. Selection of differentially expressed genes was basd on filter criteria which were defined as one-way ANOVA p-value of < 0.05 with fold changes of <2 and >2. WBPaper00053420:Microgravity-Simulated_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00201505 5226524 5226644 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
121

1 Sequence Ontology Term