WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:EGAP2.3.1 Sequence Name  EGAP2.3.1
Length (nt)  1511   Chromosome Location  II: 5233156-5235846
Chromosome . Primary Identifier  II Chromosome Location . Start  5233156
Chromosome Location . End  5235846 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
EGAP2.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004020 pho-1 EGAP2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:EGAP2.3 EGAP2.3 1350   II: 5233303-5233343

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:EGAP2.3.1 5233156 5235846 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49697   188   II: 5233156-5233343 Caenorhabditis elegans
Exon49698   64   II: 5233421-5233484 Caenorhabditis elegans
Exon49699   288   II: 5233533-5233820 Caenorhabditis elegans
Exon49700   173   II: 5233888-5234060 Caenorhabditis elegans
Exon49701   118   II: 5234400-5234517 Caenorhabditis elegans
Exon49702   93   II: 5234566-5234658 Caenorhabditis elegans
Exon49703   96   II: 5234710-5234805 Caenorhabditis elegans
Exon49704   180   II: 5235052-5235231 Caenorhabditis elegans
Exon49705   96   II: 5235279-5235374 Caenorhabditis elegans
Exon49706   105   II: 5235585-5235689 Caenorhabditis elegans
Exon49707   110   II: 5235737-5235846 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:EGAP2.3.1 5233156 5235846 -1

1 Sequence

Length
1511

1 Sequence Ontology Term

Identifier Name Description
transcript