WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00198270 Gene Name  C54A12.7
Sequence Name  ? C54A12.7 Organism  Caenorhabditis elegans
Automated Description  Enriched in neurons based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 90
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00198270

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C54A12.7 C54A12.7 90   II: 5273558-5273647
 

Other

0 CDSs

0 RNAi Result

3 Allele

Public Name
gk963801
gk963053
gk355816

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00198270 5273558 5273647 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_5273648..5278089   4442 II: 5273648-5278089 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology. DESEQ2, fold change > 2 and FDR < 0.01. WBPaper00062103:neuron_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00198270 5273558 5273647 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
90

1 Sequence Ontology Term