WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:ZK622.3a Sequence Name  ZK622.3a
Length (nt)  1428   Chromosome Location  II: 5278429-5278986
Chromosome . Primary Identifier  II Chromosome Location . Start  5278429
Chromosome Location . End  5278986
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK622.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE33504 PMT-1, isoform a 55.1 475 Caenorhabditis elegans
 

Other

26 RNAi

WormBase ID
WBRNAi00095831
WBRNAi00009482
WBRNAi00059563
WBRNAi00027083
WBRNAi00117406
WBRNAi00085997
WBRNAi00065824
WBRNAi00065014
WBRNAi00106047
WBRNAi00086005
WBRNAi00033302
WBRNAi00071135
WBRNAi00117408
WBRNAi00000474
WBRNAi00085999
WBRNAi00102568
WBRNAi00086017
WBRNAi00117410
WBRNAi00117404
WBRNAi00085995
WBRNAi00086001
WBRNAi00086003
WBRNAi00102567
WBRNAi00114757
WBRNAi00110951
WBRNAi00113979

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:ZK622.3a 5278429 5278986 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022781 pmt-1 ZK622.3 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:ZK622.3a 5278429 5278986 -1
CDS:ZK622.3a 5279306 5279569 -1
CDS:ZK622.3a 5279615 5279990 -1
CDS:ZK622.3a 5280091 5280279 -1
CDS:ZK622.3a 5282469 5282509 -1

1 Sequence

Length
1428

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:ZK622.3a.2 ZK622.3a.2 1723   II: 5278148-5282523
Transcript:ZK622.3a.1 ZK622.3a.1 1694   II: 5278171-5282517