WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D1.4d.1 Sequence Name  F56D1.4d.1
Length (nt)  4757   Chromosome Location  II: 5466358-5473802
Chromosome . Primary Identifier  II Chromosome Location . Start  5466358
Chromosome Location . End  5473802 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D1.4d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000548 clr-1 F56D1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D1.4d F56D1.4d 4224   II: 5466474-5466547

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4d.1 5466358 5473802 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50231   190   II: 5466358-5466547 Caenorhabditis elegans
Exon50240   98   II: 5466601-5466698 Caenorhabditis elegans
Exon50243   105   II: 5467003-5467107 Caenorhabditis elegans
Exon50248   107   II: 5467155-5467261 Caenorhabditis elegans
Exon50253   103   II: 5467613-5467715 Caenorhabditis elegans
Exon50258   333   II: 5467899-5468231 Caenorhabditis elegans
Exon50264   100   II: 5468884-5468983 Caenorhabditis elegans
Exon50271   173   II: 5469389-5469561 Caenorhabditis elegans
Exon50276   302   II: 5469612-5469913 Caenorhabditis elegans
Exon50281   200   II: 5469960-5470159 Caenorhabditis elegans
Exon50286   384   II: 5470217-5470600 Caenorhabditis elegans
Exon50291   747   II: 5470835-5471581 Caenorhabditis elegans
Exon50297   96   II: 5471629-5471724 Caenorhabditis elegans
Exon50301   74   II: 5471778-5471851 Caenorhabditis elegans
Exon50306   139   II: 5471916-5472054 Caenorhabditis elegans
Exon50311   691   II: 5472100-5472790 Caenorhabditis elegans
Exon50316   302   II: 5472839-5473140 Caenorhabditis elegans
Exon50320   613   II: 5473190-5473802 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4d.1 5466358 5473802 1

1 Sequence

Length
4757

1 Sequence Ontology Term

Identifier Name Description
transcript