WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D1.4b.1 Sequence Name  F56D1.4b.1
Length (nt)  4858   Chromosome Location  II: 5466378-5473812
Chromosome . Primary Identifier  II Chromosome Location . Start  5466378
Chromosome Location . End  5473812 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D1.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000548 clr-1 F56D1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D1.4b F56D1.4b 4335   II: 5466474-5466547

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4b.1 5466378 5473812 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50233   170   II: 5466378-5466547 Caenorhabditis elegans
Exon50237   104   II: 5466595-5466698 Caenorhabditis elegans
Exon50242   105   II: 5467003-5467107 Caenorhabditis elegans
Exon50247   107   II: 5467155-5467261 Caenorhabditis elegans
Exon50252   103   II: 5467613-5467715 Caenorhabditis elegans
Exon50257   333   II: 5467899-5468231 Caenorhabditis elegans
Exon50261   105   II: 5468309-5468413 Caenorhabditis elegans
Exon50263   100   II: 5468884-5468983 Caenorhabditis elegans
Exon50270   173   II: 5469389-5469561 Caenorhabditis elegans
Exon50275   302   II: 5469612-5469913 Caenorhabditis elegans
Exon50280   200   II: 5469960-5470159 Caenorhabditis elegans
Exon50285   384   II: 5470217-5470600 Caenorhabditis elegans
Exon50290   747   II: 5470835-5471581 Caenorhabditis elegans
Exon50296   96   II: 5471629-5471724 Caenorhabditis elegans
Exon50300   74   II: 5471778-5471851 Caenorhabditis elegans
Exon50305   139   II: 5471916-5472054 Caenorhabditis elegans
Exon50310   691   II: 5472100-5472790 Caenorhabditis elegans
Exon50315   302   II: 5472839-5473140 Caenorhabditis elegans
Exon50322   623   II: 5473190-5473812 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4b.1 5466378 5473812 1

1 Sequence

Length
4858

1 Sequence Ontology Term

Identifier Name Description
transcript