WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Nc Primary Transcript :

WormMine ID  Transcript:F56D1.4c Sequence Name  F56D1.4c
Length (nt)  4223   Chromosome Location  II: 5466474-5473385
Chromosome . Primary Identifier  II Chromosome Location . Start  5466474
Chromosome Location . End  5473385 Method  non_coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D1.4c

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000548 clr-1 F56D1.4 Caenorhabditis elegans
 

Other

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F56D1.4c 5466474 5473385 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50234   74   II: 5466474-5466547 Caenorhabditis elegans
Exon50239   104   II: 5466595-5466698 Caenorhabditis elegans
Exon50245   105   II: 5467003-5467107 Caenorhabditis elegans
Exon50250   107   II: 5467155-5467261 Caenorhabditis elegans
Exon50255   103   II: 5467613-5467715 Caenorhabditis elegans
Exon50260   333   II: 5467899-5468231 Caenorhabditis elegans
Exon50266   100   II: 5468884-5468983 Caenorhabditis elegans
Exon50273   173   II: 5469389-5469561 Caenorhabditis elegans
Exon50278   302   II: 5469612-5469913 Caenorhabditis elegans
Exon50283   200   II: 5469960-5470159 Caenorhabditis elegans
Exon50288   384   II: 5470217-5470600 Caenorhabditis elegans
Exon50293   747   II: 5470835-5471581 Caenorhabditis elegans
Exon50294   89   II: 5471629-5471717 Caenorhabditis elegans
Exon50303   74   II: 5471778-5471851 Caenorhabditis elegans
Exon50308   139   II: 5471916-5472054 Caenorhabditis elegans
Exon50313   691   II: 5472100-5472790 Caenorhabditis elegans
Exon50318   302   II: 5472839-5473140 Caenorhabditis elegans
Exon50319   196   II: 5473190-5473385 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F56D1.4c 5466474 5473385 1

1 Sequence

Length
4223

1 Sequence Ontology Term

Identifier Name Description
transcript