WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F10C1.7e.1 Sequence Name  F10C1.7e.1
Length (nt)  1734   Chromosome Location  II: 5750200-5753978
Chromosome . Primary Identifier  II Chromosome Location . Start  5750200
Chromosome Location . End  5753978 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F10C1.7e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002054 ifb-2 F10C1.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F10C1.7e F10C1.7e 1734   II: 5750200-5750263

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F10C1.7e.1 5750200 5753978 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon51323   64   II: 5750200-5750263 Caenorhabditis elegans
Exon51326   194   II: 5751242-5751435 Caenorhabditis elegans
Exon51329   122   II: 5751722-5751843 Caenorhabditis elegans
Exon51332   360   II: 5751889-5752248 Caenorhabditis elegans
Exon51335   420   II: 5752302-5752721 Caenorhabditis elegans
Exon51337   51   II: 5752817-5752867 Caenorhabditis elegans
Exon51338   78   II: 5752956-5753033 Caenorhabditis elegans
Exon51339   24   II: 5753083-5753106 Caenorhabditis elegans
Exon51342   148   II: 5753455-5753602 Caenorhabditis elegans
Exon51345   108   II: 5753656-5753763 Caenorhabditis elegans
Exon51346   165   II: 5753814-5753978 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F10C1.7e.1 5750200 5753978 1

1 Sequence

Length
1734

1 Sequence Ontology Term

Identifier Name Description
transcript