WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K05F1.6a.1 Sequence Name  K05F1.6a.1
Length (nt)  3301   Chromosome Location  II: 5782531-5787668
Chromosome . Primary Identifier  II Chromosome Location . Start  5782531
Chromosome Location . End  5787668 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K05F1.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019408 K05F1.6 K05F1.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K05F1.6a K05F1.6a 2571   II: 5782948-5783195

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K05F1.6a.1 5782531 5787668 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon51392   363   II: 5782531-5782893 Caenorhabditis elegans
Exon51394   253   II: 5782943-5783195 Caenorhabditis elegans
Exon51397   222   II: 5783702-5783923 Caenorhabditis elegans
Exon51401   271   II: 5784061-5784331 Caenorhabditis elegans
Exon51404   135   II: 5784941-5785075 Caenorhabditis elegans
Exon51407   132   II: 5785119-5785250 Caenorhabditis elegans
Exon51411   131   II: 5785303-5785433 Caenorhabditis elegans
Exon51415   170   II: 5785482-5785651 Caenorhabditis elegans
Exon51419   110   II: 5785698-5785807 Caenorhabditis elegans
Exon51423   228   II: 5785854-5786081 Caenorhabditis elegans
Exon51427   251   II: 5786187-5786437 Caenorhabditis elegans
Exon51431   370   II: 5786486-5786855 Caenorhabditis elegans
Exon51435   131   II: 5786907-5787037 Caenorhabditis elegans
Exon51439   79   II: 5787084-5787162 Caenorhabditis elegans
Exon51444   455   II: 5787214-5787668 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K05F1.6a.1 5782531 5787668 1

1 Sequence

Length
3301

1 Sequence Ontology Term

Identifier Name Description
transcript