WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K06A1.2a.1 Sequence Name  K06A1.2a.1
Length (nt)  1479   Chromosome Location  II: 6444010-6446152
Chromosome . Primary Identifier  II Chromosome Location . Start  6444010
Chromosome Location . End  6446152 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K06A1.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019425 K06A1.2 K06A1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K06A1.2a K06A1.2a 1443   II: 6444028-6444062

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K06A1.2a.1 6444010 6446152 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon53158   53   II: 6444010-6444062 Caenorhabditis elegans
Exon53159   212   II: 6444318-6444529 Caenorhabditis elegans
Exon53160   251   II: 6444575-6444825 Caenorhabditis elegans
Exon53162   108   II: 6444870-6444977 Caenorhabditis elegans
Exon53164   87   II: 6445018-6445104 Caenorhabditis elegans
Exon53166   168   II: 6445150-6445317 Caenorhabditis elegans
Exon53168   204   II: 6445365-6445568 Caenorhabditis elegans
Exon53170   77   II: 6445617-6445693 Caenorhabditis elegans
Exon53172   76   II: 6445746-6445821 Caenorhabditis elegans
Exon53174   65   II: 6445866-6445930 Caenorhabditis elegans
Exon53177   178   II: 6445975-6446152 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K06A1.2a.1 6444010 6446152 1

1 Sequence

Length
1479

1 Sequence Ontology Term

Identifier Name Description
transcript