WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28D9.3d.1 Sequence Name  T28D9.3d.1
Length (nt)  1311   Chromosome Location  II: 6485476-6488810
Chromosome . Primary Identifier  II Chromosome Location . Start  6485476
Chromosome Location . End  6488810 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28D9.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020895 plpp-1.2 T28D9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28D9.3d T28D9.3d 1077   II: 6485714-6485791

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28D9.3d.1 6485476 6488810 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon53301   88   II: 6485476-6485563 Caenorhabditis elegans
Exon53303   164   II: 6485628-6485791 Caenorhabditis elegans
Exon53310   85   II: 6486851-6486935 Caenorhabditis elegans
Exon53317   149   II: 6487556-6487704 Caenorhabditis elegans
Exon53324   118   II: 6487752-6487869 Caenorhabditis elegans
Exon53331   136   II: 6487914-6488049 Caenorhabditis elegans
Exon53339   112   II: 6488098-6488209 Caenorhabditis elegans
Exon53345   180   II: 6488257-6488436 Caenorhabditis elegans
Exon53352   100   II: 6488487-6488586 Caenorhabditis elegans
Exon53359   179   II: 6488632-6488810 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28D9.3d.1 6485476 6488810 1

1 Sequence

Length
1311

1 Sequence Ontology Term

Identifier Name Description
transcript