WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R05G9R.1.1 Sequence Name  R05G9R.1.1
Length (nt)  2902   Chromosome Location  II: 6509500-6514011
Chromosome . Primary Identifier  II Chromosome Location . Start  6509500
Chromosome Location . End  6514011 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R05G9R.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019906 R05G9R.1 R05G9R.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R05G9R.1 R05G9R.1 2667   II: 6509707-6509955

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R05G9R.1.1 6509500 6514011 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon53437   456   II: 6509500-6509955 Caenorhabditis elegans
Exon53438   69   II: 6510008-6510076 Caenorhabditis elegans
Exon53439   196   II: 6510121-6510316 Caenorhabditis elegans
Exon53440   110   II: 6510837-6510946 Caenorhabditis elegans
Exon53441   237   II: 6510994-6511230 Caenorhabditis elegans
Exon53442   735   II: 6511276-6512010 Caenorhabditis elegans
Exon53443   329   II: 6512068-6512396 Caenorhabditis elegans
Exon53444   94   II: 6512458-6512551 Caenorhabditis elegans
Exon53445   91   II: 6512597-6512687 Caenorhabditis elegans
Exon53446   260   II: 6512771-6513030 Caenorhabditis elegans
Exon53447   97   II: 6513080-6513176 Caenorhabditis elegans
Exon53448   125   II: 6513403-6513527 Caenorhabditis elegans
Exon53449   103   II: 6513909-6514011 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R05G9R.1.1 6509500 6514011 -1

1 Sequence

Length
2902

1 Sequence Ontology Term

Identifier Name Description
transcript