WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56E6.1.1 Sequence Name  C56E6.1.1
Length (nt)  2148   Chromosome Location  II: 6532163-6535455
Chromosome . Primary Identifier  II Chromosome Location . Start  6532163
Chromosome Location . End  6535455 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56E6.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006522 abcx-1 C56E6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56E6.1 C56E6.1 2133   II: 6532178-6532233

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56E6.1.1 6532163 6535455 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon53515   71   II: 6532163-6532233 Caenorhabditis elegans
Exon53516   425   II: 6532277-6532701 Caenorhabditis elegans
Exon53518   113   II: 6533135-6533247 Caenorhabditis elegans
Exon53519   274   II: 6533290-6533563 Caenorhabditis elegans
Exon53520   117   II: 6533608-6533724 Caenorhabditis elegans
Exon53521   181   II: 6533925-6534105 Caenorhabditis elegans
Exon53522   398   II: 6534148-6534545 Caenorhabditis elegans
Exon53523   141   II: 6534683-6534823 Caenorhabditis elegans
Exon53524   120   II: 6534931-6535050 Caenorhabditis elegans
Exon53525   83   II: 6535101-6535183 Caenorhabditis elegans
Exon53526   225   II: 6535231-6535455 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56E6.1.1 6532163 6535455 1

1 Sequence

Length
2148

1 Sequence Ontology Term

Identifier Name Description
transcript