WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H43E16.1a.1 Sequence Name  H43E16.1a.1
Length (nt)  3740   Chromosome Location  II: 6674268-6679370
Chromosome . Primary Identifier  II Chromosome Location . Start  6674268
Chromosome Location . End  6679370 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H43E16.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019273 H43E16.1 H43E16.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H43E16.1a H43E16.1a 3612   II: 6674317-6674431

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H43E16.1a.1 6674268 6679370 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54011   164   II: 6674268-6674431 Caenorhabditis elegans
Exon54013   274   II: 6675376-6675649 Caenorhabditis elegans
Exon54015   134   II: 6675736-6675869 Caenorhabditis elegans
Exon54017   301   II: 6675913-6676213 Caenorhabditis elegans
Exon54019   137   II: 6676267-6676403 Caenorhabditis elegans
Exon54022   2156   II: 6676447-6678602 Caenorhabditis elegans
Exon54024   140   II: 6678647-6678786 Caenorhabditis elegans
Exon54026   78   II: 6678844-6678921 Caenorhabditis elegans
Exon54028   72   II: 6678969-6679040 Caenorhabditis elegans
Exon54031   284   II: 6679087-6679370 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H43E16.1a.1 6674268 6679370 1

1 Sequence

Length
3740

1 Sequence Ontology Term

Identifier Name Description
transcript