WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18H9.3c.1 Sequence Name  C18H9.3c.1
Length (nt)  4321   Chromosome Location  II: 6684235-6692729
Chromosome . Primary Identifier  II Chromosome Location . Start  6684235
Chromosome Location . End  6692729 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18H9.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016002 gyf-1 C18H9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18H9.3c C18H9.3c 3312   II: 6684249-6684304

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.3c.1 6684235 6692729 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54061   70   II: 6684235-6684304 Caenorhabditis elegans
Exon54068   97   II: 6684705-6684801 Caenorhabditis elegans
Exon54069   204   II: 6685109-6685312 Caenorhabditis elegans
Exon54074   169   II: 6685788-6685956 Caenorhabditis elegans
Exon54078   306   II: 6686030-6686335 Caenorhabditis elegans
Exon54082   681   II: 6686381-6687061 Caenorhabditis elegans
Exon54086   1187   II: 6687108-6688294 Caenorhabditis elegans
Exon54090   273   II: 6688344-6688616 Caenorhabditis elegans
Exon54094   117   II: 6691303-6691419 Caenorhabditis elegans
Exon54099   99   II: 6691466-6691564 Caenorhabditis elegans
Exon54106   1118   II: 6691612-6692729 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.3c.1 6684235 6692729 1

1 Sequence

Length
4321

1 Sequence Ontology Term

Identifier Name Description
transcript