WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18H9.3a.1 Sequence Name  C18H9.3a.1
Length (nt)  4116   Chromosome Location  II: 6684236-6692729
Chromosome . Primary Identifier  II Chromosome Location . Start  6684236
Chromosome Location . End  6692729 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18H9.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016002 gyf-1 C18H9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18H9.3a C18H9.3a 3108   II: 6684249-6684304

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.3a.1 6684236 6692729 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54062   69   II: 6684236-6684304 Caenorhabditis elegans
Exon54067   97   II: 6684705-6684801 Caenorhabditis elegans
Exon54072   169   II: 6685788-6685956 Caenorhabditis elegans
Exon54076   306   II: 6686030-6686335 Caenorhabditis elegans
Exon54080   681   II: 6686381-6687061 Caenorhabditis elegans
Exon54084   1187   II: 6687108-6688294 Caenorhabditis elegans
Exon54088   273   II: 6688344-6688616 Caenorhabditis elegans
Exon54092   117   II: 6691303-6691419 Caenorhabditis elegans
Exon54097   99   II: 6691466-6691564 Caenorhabditis elegans
Exon54105   1118   II: 6691612-6692729 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.3a.1 6684236 6692729 1

1 Sequence

Length
4116

1 Sequence Ontology Term

Identifier Name Description
transcript