WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C18H9.7.2 Sequence Name  C18H9.7.2
Length (nt)  2137   Chromosome Location  II: 6702213-6705499
Chromosome . Primary Identifier  II Chromosome Location . Start  6702213
Chromosome Location . End  6705499 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C18H9.7.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004507 rpy-1 C18H9.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18H9.7 C18H9.7 1848   II: 6702496-6702600

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.7.2 6702213 6705499 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54124   388   II: 6702213-6702600 Caenorhabditis elegans
Exon54127   356   II: 6702704-6703059 Caenorhabditis elegans
Exon54129   131   II: 6703315-6703445 Caenorhabditis elegans
Exon54131   200   II: 6703494-6703693 Caenorhabditis elegans
Exon54133   129   II: 6703743-6703871 Caenorhabditis elegans
Exon54135   66   II: 6704102-6704167 Caenorhabditis elegans
Exon54137   117   II: 6704314-6704430 Caenorhabditis elegans
Exon54139   163   II: 6704483-6704645 Caenorhabditis elegans
Exon54141   148   II: 6704688-6704835 Caenorhabditis elegans
Exon54143   266   II: 6704881-6705146 Caenorhabditis elegans
Exon54145   77   II: 6705196-6705272 Caenorhabditis elegans
Exon54147   96   II: 6705404-6705499 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C18H9.7.2 6702213 6705499 -1

1 Sequence

Length
2137

1 Sequence Ontology Term

Identifier Name Description
transcript