WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13C2.2.1 Sequence Name  T13C2.2.1
Length (nt)  1732   Chromosome Location  II: 6792191-6799317
Chromosome . Primary Identifier  II Chromosome Location . Start  6792191
Chromosome Location . End  6799317 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13C2.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020478 T13C2.2 T13C2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13C2.2 T13C2.2 1578   II: 6792270-6792359

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13C2.2.1 6792191 6799317 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54431   169   II: 6792191-6792359 Caenorhabditis elegans
Exon54432   282   II: 6792497-6792778 Caenorhabditis elegans
Exon54433   85   II: 6792852-6792936 Caenorhabditis elegans
Exon54434   95   II: 6793037-6793131 Caenorhabditis elegans
Exon54435   145   II: 6793180-6793324 Caenorhabditis elegans
Exon54436   128   II: 6793369-6793496 Caenorhabditis elegans
Exon54437   246   II: 6793542-6793787 Caenorhabditis elegans
Exon54438   97   II: 6798649-6798745 Caenorhabditis elegans
Exon54439   313   II: 6798787-6799099 Caenorhabditis elegans
Exon54441   172   II: 6799146-6799317 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13C2.2.1 6792191 6799317 1

1 Sequence

Length
1732

1 Sequence Ontology Term

Identifier Name Description
transcript