WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04A2.3c.3 Sequence Name  C04A2.3c.3
Length (nt)  4046   Chromosome Location  II: 6835015-6847908
Chromosome . Primary Identifier  II Chromosome Location . Start  6835015
Chromosome Location . End  6847908 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A2.3c.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001194 egl-27 C04A2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A2.3c C04A2.3c 1839   II: 6845375-6846487

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.3c.3 6835015 6847908 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54499   151   II: 6835015-6835165 Caenorhabditis elegans
Exon54508   119   II: 6835455-6835573 Caenorhabditis elegans
Exon54520   141   II: 6836627-6836767 Caenorhabditis elegans
Exon54531   126   II: 6837852-6837977 Caenorhabditis elegans
Exon54545   65   II: 6838027-6838091 Caenorhabditis elegans
Exon54561   163   II: 6840193-6840355 Caenorhabditis elegans
Exon54577   180   II: 6840451-6840630 Caenorhabditis elegans
Exon54593   228   II: 6840683-6840910 Caenorhabditis elegans
Exon54617   229   II: 6841485-6841713 Caenorhabditis elegans
Exon54638   196   II: 6842410-6842605 Caenorhabditis elegans
Exon54661   1126   II: 6845362-6846487 Caenorhabditis elegans
Exon54691   504   II: 6846537-6847040 Caenorhabditis elegans
Exon54725   818   II: 6847091-6847908 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.3c.3 6835015 6847908 1

1 Sequence

Length
4046

1 Sequence Ontology Term

Identifier Name Description
transcript