WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04A2.3j.1 Sequence Name  C04A2.3j.1
Length (nt)  3279   Chromosome Location  II: 6835472-6847312
Chromosome . Primary Identifier  II Chromosome Location . Start  6835472
Chromosome Location . End  6847312 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A2.3j.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001194 egl-27 C04A2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A2.3j C04A2.3j 3279   II: 6835472-6835573

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.3j.1 6835472 6847312 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54521   102   II: 6835472-6835573 Caenorhabditis elegans
Exon54533   141   II: 6836627-6836767 Caenorhabditis elegans
Exon54544   126   II: 6837852-6837977 Caenorhabditis elegans
Exon54558   65   II: 6838027-6838091 Caenorhabditis elegans
Exon54574   163   II: 6840193-6840355 Caenorhabditis elegans
Exon54591   180   II: 6840451-6840630 Caenorhabditis elegans
Exon54615   219   II: 6840692-6840910 Caenorhabditis elegans
Exon54632   229   II: 6841485-6841713 Caenorhabditis elegans
Exon54654   196   II: 6842410-6842605 Caenorhabditis elegans
Exon54678   1126   II: 6845362-6846487 Caenorhabditis elegans
Exon54692   510   II: 6846531-6847040 Caenorhabditis elegans
Exon54717   222   II: 6847091-6847312 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.3j.1 6835472 6847312 1

1 Sequence

Length
3279

1 Sequence Ontology Term

Identifier Name Description
transcript