WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C44B7.2a.1 Sequence Name  C44B7.2a.1
Length (nt)  1921   Chromosome Location  II: 6898736-6901722
Chromosome . Primary Identifier  II Chromosome Location . Start  6898736
Chromosome Location . End  6901722 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C44B7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016624 hrpl-1 C44B7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C44B7.2a C44B7.2a 1794   II: 6898751-6898779

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C44B7.2a.1 6898736 6901722 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54904   44   II: 6898736-6898779 Caenorhabditis elegans
Exon54906   97   II: 6898830-6898926 Caenorhabditis elegans
Exon54909   165   II: 6898972-6899136 Caenorhabditis elegans
Exon54912   303   II: 6899438-6899740 Caenorhabditis elegans
Exon54915   61   II: 6899790-6899850 Caenorhabditis elegans
Exon54918   60   II: 6900219-6900278 Caenorhabditis elegans
Exon54921   203   II: 6900325-6900527 Caenorhabditis elegans
Exon54924   93   II: 6900579-6900671 Caenorhabditis elegans
Exon54927   489   II: 6900715-6901203 Caenorhabditis elegans
Exon54929   130   II: 6901256-6901385 Caenorhabditis elegans
Exon54931   246   II: 6901431-6901676 Caenorhabditis elegans
Exon54933   30   II: 6901693-6901722 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C44B7.2a.1 6898736 6901722 1

1 Sequence

Length
1921

1 Sequence Ontology Term

Identifier Name Description
transcript