WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F22D3.2d.1 Sequence Name  F22D3.2d.1
Length (nt)  2920   Chromosome Location  II: 6928770-6947900
Chromosome . Primary Identifier  II Chromosome Location . Start  6928770
Chromosome Location . End  6947900 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F22D3.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017699 flcn-1 F22D3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22D3.2d F22D3.2d 1869   II: 6929313-6929406

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F22D3.2d.1 6928770 6947900 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55040   90   II: 6928770-6928859 Caenorhabditis elegans
Exon55041   101   II: 6929306-6929406 Caenorhabditis elegans
Exon55046   80   II: 6930627-6930706 Caenorhabditis elegans
Exon55051   104   II: 6930757-6930860 Caenorhabditis elegans
Exon55056   85   II: 6930915-6930999 Caenorhabditis elegans
Exon55061   178   II: 6931615-6931792 Caenorhabditis elegans
Exon55066   76   II: 6932203-6932278 Caenorhabditis elegans
Exon55071   75   II: 6932327-6932401 Caenorhabditis elegans
Exon55076   133   II: 6932447-6932579 Caenorhabditis elegans
Exon55081   123   II: 6933014-6933136 Caenorhabditis elegans
Exon55086   71   II: 6934085-6934155 Caenorhabditis elegans
Exon55095   82   II: 6940749-6940830 Caenorhabditis elegans
Exon55099   66   II: 6942712-6942777 Caenorhabditis elegans
Exon55112   111   II: 6944738-6944848 Caenorhabditis elegans
Exon55116   122   II: 6946129-6946250 Caenorhabditis elegans
Exon55122   367   II: 6946431-6946797 Caenorhabditis elegans
Exon55131   1056   II: 6946845-6947900 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F22D3.2d.1 6928770 6947900 1

1 Sequence

Length
2920

1 Sequence Ontology Term

Identifier Name Description
transcript