WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C15F1.3a.1 Sequence Name  C15F1.3a.1
Length (nt)  4663   Chromosome Location  II: 6955384-6965673
Chromosome . Primary Identifier  II Chromosome Location . Start  6955384
Chromosome Location . End  6965673 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C15F1.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006605 tra-2 C15F1.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C15F1.3a C15F1.3a 4428   II: 6955619-6956383

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C15F1.3a.1 6955384 6965673 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55336   1000   II: 6955384-6956383 Caenorhabditis elegans
Exon55338   384   II: 6956433-6956816 Caenorhabditis elegans
Exon55341   149   II: 6956957-6957105 Caenorhabditis elegans
Exon55344   168   II: 6958952-6959119 Caenorhabditis elegans
Exon55346   103   II: 6959165-6959267 Caenorhabditis elegans
Exon55348   109   II: 6959313-6959421 Caenorhabditis elegans
Exon55350   95   II: 6961573-6961667 Caenorhabditis elegans
Exon55352   180   II: 6962012-6962191 Caenorhabditis elegans
Exon55354   74   II: 6962354-6962427 Caenorhabditis elegans
Exon55356   101   II: 6962476-6962576 Caenorhabditis elegans
Exon55358   95   II: 6962622-6962716 Caenorhabditis elegans
Exon55360   78   II: 6962762-6962839 Caenorhabditis elegans
Exon55362   97   II: 6962892-6962988 Caenorhabditis elegans
Exon55364   115   II: 6963048-6963162 Caenorhabditis elegans
Exon55366   264   II: 6963214-6963477 Caenorhabditis elegans
Exon55368   136   II: 6963536-6963671 Caenorhabditis elegans
Exon55370   681   II: 6963721-6964401 Caenorhabditis elegans
Exon55372   132   II: 6964456-6964587 Caenorhabditis elegans
Exon55374   113   II: 6964643-6964755 Caenorhabditis elegans
Exon55376   196   II: 6964811-6965006 Caenorhabditis elegans
Exon55378   97   II: 6965057-6965153 Caenorhabditis elegans
Exon55380   113   II: 6965204-6965316 Caenorhabditis elegans
Exon55382   183   II: 6965491-6965673 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C15F1.3a.1 6955384 6965673 -1

1 Sequence

Length
4663

1 Sequence Ontology Term

Identifier Name Description
transcript