WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F10E7.4.1 Sequence Name  F10E7.4.1
Length (nt)  2699   Chromosome Location  II: 7116557-7120665
Chromosome . Primary Identifier  II Chromosome Location . Start  7116557
Chromosome Location . End  7120665 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F10E7.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006893 spon-1 F10E7.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F10E7.4 F10E7.4 2460   II: 7116637-7116780

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F10E7.4.1 7116557 7120665 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon55887   224   II: 7116557-7116780 Caenorhabditis elegans
Exon55888   67   II: 7116829-7116895 Caenorhabditis elegans
Exon55889   101   II: 7116950-7117050 Caenorhabditis elegans
Exon55890   114   II: 7117475-7117588 Caenorhabditis elegans
Exon55891   100   II: 7117635-7117734 Caenorhabditis elegans
Exon55892   129   II: 7117788-7117916 Caenorhabditis elegans
Exon55893   241   II: 7117964-7118204 Caenorhabditis elegans
Exon55894   395   II: 7118509-7118903 Caenorhabditis elegans
Exon55895   174   II: 7118949-7119122 Caenorhabditis elegans
Exon55896   393   II: 7119173-7119565 Caenorhabditis elegans
Exon55897   417   II: 7119861-7120277 Caenorhabditis elegans
Exon55898   344   II: 7120322-7120665 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F10E7.4.1 7116557 7120665 1

1 Sequence

Length
2699

1 Sequence Ontology Term

Identifier Name Description
transcript