WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27H5.2a.1 Sequence Name  C27H5.2a.1
Length (nt)  1785   Chromosome Location  II: 7155581-7160961
Chromosome . Primary Identifier  II Chromosome Location . Start  7155581
Chromosome Location . End  7160961 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27H5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016172 C27H5.2 C27H5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27H5.2a C27H5.2a 1569   II: 7155683-7155707

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27H5.2a.1 7155581 7160961 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56004   127   II: 7155581-7155707 Caenorhabditis elegans
Exon56007   93   II: 7157051-7157143 Caenorhabditis elegans
Exon56011   123   II: 7157867-7157989 Caenorhabditis elegans
Exon56015   126   II: 7158033-7158158 Caenorhabditis elegans
Exon56019   104   II: 7158251-7158354 Caenorhabditis elegans
Exon56023   276   II: 7158420-7158695 Caenorhabditis elegans
Exon56027   83   II: 7158742-7158824 Caenorhabditis elegans
Exon56031   103   II: 7158874-7158976 Caenorhabditis elegans
Exon56035   212   II: 7159024-7159235 Caenorhabditis elegans
Exon56039   109   II: 7159284-7159392 Caenorhabditis elegans
Exon56043   104   II: 7159509-7159612 Caenorhabditis elegans
Exon56048   70   II: 7160394-7160463 Caenorhabditis elegans
Exon56050   255   II: 7160707-7160961 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27H5.2a.1 7155581 7160961 1

1 Sequence

Length
1785

1 Sequence Ontology Term

Identifier Name Description
transcript