WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27H5.7a.1 Sequence Name  C27H5.7a.1
Length (nt)  1844   Chromosome Location  II: 7168793-7171355
Chromosome . Primary Identifier  II Chromosome Location . Start  7168793
Chromosome Location . End  7171355 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27H5.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001129 dyf-13 C27H5.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27H5.7a C27H5.7a 1725   II: 7168828-7168954

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27H5.7a.1 7168793 7171355 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56079   162   II: 7168793-7168954 Caenorhabditis elegans
Exon56081   134   II: 7169006-7169139 Caenorhabditis elegans
Exon56083   107   II: 7169187-7169293 Caenorhabditis elegans
Exon56085   240   II: 7169339-7169578 Caenorhabditis elegans
Exon56087   64   II: 7169691-7169754 Caenorhabditis elegans
Exon56089   110   II: 7169804-7169913 Caenorhabditis elegans
Exon56091   398   II: 7169959-7170356 Caenorhabditis elegans
Exon56093   101   II: 7170413-7170513 Caenorhabditis elegans
Exon56095   187   II: 7170685-7170871 Caenorhabditis elegans
Exon56097   128   II: 7170921-7171048 Caenorhabditis elegans
Exon56099   126   II: 7171093-7171218 Caenorhabditis elegans
Exon56102   87   II: 7171269-7171355 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27H5.7a.1 7168793 7171355 -1

1 Sequence

Length
1844

1 Sequence Ontology Term

Identifier Name Description
transcript