WormMine: Gene WBGene00045090

• WormBase Gene ID: WBGene00045090
• Gene Name: C27H5.10
• Sequence Name: C27H5.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by hpl-2 based on tiling array studies.
• Biotype: SO:0001267
• Genetic Position: :±
• Length (nt): 74

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00045090

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C27H5.10	C27H5.10	74	II: 7184419-7184492

Other

0 CDSs

4 RNAi Result

• WBRNAi00041372
• WBRNAi00029283
• WBRNAi00112684
• WBRNAi00011273

4 Allele

• gk963801
• gk963053
• gk962682
• gk157

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00045090
• Start: 7184419
• End: 7184492
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts down regulated in hpl-2(tm1489) embryo comparing to N2 in tiling array analysis.	Oligos from the tiling array were mapped to chromosome coordinates of the exons from Wormbase WS180. Any oligo that mapped to a gene on both the Watson and Crick strands was excluded. The remaining oligos were then grouped together (perfect match and mismatch) into probe sets and written out into an Affymetrix CDF file. The CDF file was converted into an R-package and loaded into R. The expression values were calculated using the justRMA function from Bioconductor. This used a Benjamini and Hochberg false discovery rate correction.	WBPaper00040560:hpl-2_embryo_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00045090
• Start: 7184419
• End: 7184492
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 74

1 Sequence Ontology Term