WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E04F6.11d.1 Sequence Name  E04F6.11d.1
Length (nt)  3192   Chromosome Location  II: 7218412-7225340
Chromosome . Primary Identifier  II Chromosome Location . Start  7218412
Chromosome Location . End  7225340 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E04F6.11d E04F6.11d 3192   II: 7218412-7218478

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11d.1 7218412 7225340 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56221   67   II: 7218412-7218478 Caenorhabditis elegans
Exon56230   245   II: 7218529-7218773 Caenorhabditis elegans
Exon56241   198   II: 7218842-7219039 Caenorhabditis elegans
Exon56253   87   II: 7219172-7219258 Caenorhabditis elegans
Exon56265   105   II: 7219304-7219408 Caenorhabditis elegans
Exon56280   92   II: 7219732-7219823 Caenorhabditis elegans
Exon56291   209   II: 7219878-7220086 Caenorhabditis elegans
Exon56303   217   II: 7220133-7220349 Caenorhabditis elegans
Exon56314   253   II: 7220399-7220651 Caenorhabditis elegans
Exon56326   279   II: 7220700-7220978 Caenorhabditis elegans
Exon56338   192   II: 7221032-7221223 Caenorhabditis elegans
Exon56350   187   II: 7221271-7221457 Caenorhabditis elegans
Exon56362   374   II: 7221503-7221876 Caenorhabditis elegans
Exon56374   266   II: 7221931-7222196 Caenorhabditis elegans
Exon56386   120   II: 7222387-7222506 Caenorhabditis elegans
Exon56398   76   II: 7222561-7222636 Caenorhabditis elegans
Exon56411   96   II: 7222959-7223054 Caenorhabditis elegans
Exon56423   95   II: 7225154-7225248 Caenorhabditis elegans
Exon56427   34   II: 7225307-7225340 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11d.1 7218412 7225340 -1

1 Sequence

Length
3192

1 Sequence Ontology Term

Identifier Name Description
transcript