WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E04F6.11g.1 Sequence Name  E04F6.11g.1
Length (nt)  3249   Chromosome Location  II: 7218412-7225340
Chromosome . Primary Identifier  II Chromosome Location . Start  7218412
Chromosome Location . End  7225340 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E04F6.11g E04F6.11g 3249   II: 7218412-7218484

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11g.1 7218412 7225340 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56222   73   II: 7218412-7218484 Caenorhabditis elegans
Exon56233   245   II: 7218529-7218773 Caenorhabditis elegans
Exon56244   198   II: 7218842-7219039 Caenorhabditis elegans
Exon56256   87   II: 7219172-7219258 Caenorhabditis elegans
Exon56268   105   II: 7219304-7219408 Caenorhabditis elegans
Exon56272   42   II: 7219612-7219653 Caenorhabditis elegans
Exon56283   92   II: 7219732-7219823 Caenorhabditis elegans
Exon56294   209   II: 7219878-7220086 Caenorhabditis elegans
Exon56306   217   II: 7220133-7220349 Caenorhabditis elegans
Exon56317   253   II: 7220399-7220651 Caenorhabditis elegans
Exon56329   279   II: 7220700-7220978 Caenorhabditis elegans
Exon56342   201   II: 7221032-7221232 Caenorhabditis elegans
Exon56353   187   II: 7221271-7221457 Caenorhabditis elegans
Exon56365   374   II: 7221503-7221876 Caenorhabditis elegans
Exon56377   266   II: 7221931-7222196 Caenorhabditis elegans
Exon56389   120   II: 7222387-7222506 Caenorhabditis elegans
Exon56401   76   II: 7222561-7222636 Caenorhabditis elegans
Exon56413   96   II: 7222959-7223054 Caenorhabditis elegans
Exon56424   95   II: 7225154-7225248 Caenorhabditis elegans
Exon56428   34   II: 7225307-7225340 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11g.1 7218412 7225340 -1

1 Sequence

Length
3249

1 Sequence Ontology Term

Identifier Name Description
transcript