WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E04F6.11g.1 Sequence Name  E04F6.11g.1
Length (nt)  3249   Chromosome Location  II: 7218412-7225340
Chromosome . Primary Identifier  II Chromosome Location . Start  7218412
Chromosome Location . End  7225340 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E04F6.11g E04F6.11g 3249   II: 7218412-7218484

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11g.1 7218412 7225340 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56229   73   II: 7218412-7218484 Caenorhabditis elegans
Exon56240   245   II: 7218529-7218773 Caenorhabditis elegans
Exon56251   198   II: 7218842-7219039 Caenorhabditis elegans
Exon56263   87   II: 7219172-7219258 Caenorhabditis elegans
Exon56275   105   II: 7219304-7219408 Caenorhabditis elegans
Exon56279   42   II: 7219612-7219653 Caenorhabditis elegans
Exon56290   92   II: 7219732-7219823 Caenorhabditis elegans
Exon56301   209   II: 7219878-7220086 Caenorhabditis elegans
Exon56313   217   II: 7220133-7220349 Caenorhabditis elegans
Exon56324   253   II: 7220399-7220651 Caenorhabditis elegans
Exon56336   279   II: 7220700-7220978 Caenorhabditis elegans
Exon56349   201   II: 7221032-7221232 Caenorhabditis elegans
Exon56360   187   II: 7221271-7221457 Caenorhabditis elegans
Exon56372   374   II: 7221503-7221876 Caenorhabditis elegans
Exon56384   266   II: 7221931-7222196 Caenorhabditis elegans
Exon56396   120   II: 7222387-7222506 Caenorhabditis elegans
Exon56408   76   II: 7222561-7222636 Caenorhabditis elegans
Exon56420   96   II: 7222959-7223054 Caenorhabditis elegans
Exon56431   95   II: 7225154-7225248 Caenorhabditis elegans
Exon56435   34   II: 7225307-7225340 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11g.1 7218412 7225340 -1

1 Sequence

Length
3249

1 Sequence Ontology Term

Identifier Name Description
transcript