WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:E04F6.11c.1 Sequence Name  E04F6.11c.1
Length (nt)  3219   Chromosome Location  II: 7218412-7225648
Chromosome . Primary Identifier  II Chromosome Location . Start  7218412
Chromosome Location . End  7225648 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
E04F6.11c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000530 clh-3 E04F6.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:E04F6.11c E04F6.11c 3219   II: 7218412-7218478

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11c.1 7218412 7225648 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56230   67   II: 7218412-7218478 Caenorhabditis elegans
Exon56236   245   II: 7218529-7218773 Caenorhabditis elegans
Exon56247   198   II: 7218842-7219039 Caenorhabditis elegans
Exon56259   87   II: 7219172-7219258 Caenorhabditis elegans
Exon56271   105   II: 7219304-7219408 Caenorhabditis elegans
Exon56286   92   II: 7219732-7219823 Caenorhabditis elegans
Exon56297   209   II: 7219878-7220086 Caenorhabditis elegans
Exon56309   217   II: 7220133-7220349 Caenorhabditis elegans
Exon56320   253   II: 7220399-7220651 Caenorhabditis elegans
Exon56332   279   II: 7220700-7220978 Caenorhabditis elegans
Exon56344   192   II: 7221032-7221223 Caenorhabditis elegans
Exon56356   187   II: 7221271-7221457 Caenorhabditis elegans
Exon56368   374   II: 7221503-7221876 Caenorhabditis elegans
Exon56380   266   II: 7221931-7222196 Caenorhabditis elegans
Exon56392   120   II: 7222387-7222506 Caenorhabditis elegans
Exon56404   76   II: 7222561-7222636 Caenorhabditis elegans
Exon56417   96   II: 7222959-7223054 Caenorhabditis elegans
Exon56429   95   II: 7225154-7225248 Caenorhabditis elegans
Exon56437   61   II: 7225588-7225648 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:E04F6.11c.1 7218412 7225648 -1

1 Sequence

Length
3219

1 Sequence Ontology Term

Identifier Name Description
transcript