WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F32A5.2b.1 Sequence Name  F32A5.2b.1
Length (nt)  2825   Chromosome Location  II: 7245876-7250181
Chromosome . Primary Identifier  II Chromosome Location . Start  7245876
Chromosome Location . End  7250181 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F32A5.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017968 skpo-3 F32A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F32A5.2b F32A5.2b 2580   II: 7245918-7245984

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F32A5.2b.1 7245876 7250181 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56466   109   II: 7245876-7245984 Caenorhabditis elegans
Exon56471   107   II: 7246035-7246141 Caenorhabditis elegans
Exon56474   132   II: 7246293-7246424 Caenorhabditis elegans
Exon56477   101   II: 7246469-7246569 Caenorhabditis elegans
Exon56482   315   II: 7247335-7247649 Caenorhabditis elegans
Exon56485   125   II: 7247812-7247936 Caenorhabditis elegans
Exon56488   240   II: 7247982-7248221 Caenorhabditis elegans
Exon56491   235   II: 7248278-7248512 Caenorhabditis elegans
Exon56494   203   II: 7248561-7248763 Caenorhabditis elegans
Exon56497   862   II: 7248816-7249677 Caenorhabditis elegans
Exon56500   103   II: 7249730-7249832 Caenorhabditis elegans
Exon56502   293   II: 7249889-7250181 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F32A5.2b.1 7245876 7250181 1

1 Sequence

Length
2825

1 Sequence Ontology Term

Identifier Name Description
transcript