WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1290.4b.2 Sequence Name  ZK1290.4b.2
Length (nt)  3090   Chromosome Location  II: 7538435-7543003
Chromosome . Primary Identifier  II Chromosome Location . Start  7538435
Chromosome Location . End  7543003 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1290.4b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003592 nfi-1 ZK1290.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1290.4b ZK1290.4b 2364   II: 7538790-7538963

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.4b.2 7538435 7543003 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57258   171   II: 7538435-7538605 Caenorhabditis elegans
Exon57262   264   II: 7538700-7538963 Caenorhabditis elegans
Exon57267   81   II: 7539019-7539099 Caenorhabditis elegans
Exon57272   99   II: 7539155-7539253 Caenorhabditis elegans
Exon57277   132   II: 7539309-7539440 Caenorhabditis elegans
Exon57282   355   II: 7539497-7539851 Caenorhabditis elegans
Exon57288   259   II: 7540267-7540525 Caenorhabditis elegans
Exon57293   296   II: 7540575-7540870 Caenorhabditis elegans
Exon57298   138   II: 7540913-7541050 Caenorhabditis elegans
Exon57303   133   II: 7541315-7541447 Caenorhabditis elegans
Exon57308   287   II: 7541495-7541781 Caenorhabditis elegans
Exon57313   148   II: 7541831-7541978 Caenorhabditis elegans
Exon57318   100   II: 7542159-7542258 Caenorhabditis elegans
Exon57323   627   II: 7542377-7543003 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.4b.2 7538435 7543003 1

1 Sequence

Length
3090

1 Sequence Ontology Term

Identifier Name Description
transcript