WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07G3.3a.1 Sequence Name  R07G3.3a.1
Length (nt)  6085   Chromosome Location  II: 7599657-7608016
Chromosome . Primary Identifier  II Chromosome Location . Start  7599657
Chromosome Location . End  7608016 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07G3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019940 npp-21 R07G3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07G3.3a R07G3.3a 5904   II: 7599659-7599931

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07G3.3a.1 7599657 7608016 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57490   275   II: 7599657-7599931 Caenorhabditis elegans
Exon57495   201   II: 7599978-7600178 Caenorhabditis elegans
Exon57500   258   II: 7600222-7600479 Caenorhabditis elegans
Exon57505   708   II: 7600528-7601235 Caenorhabditis elegans
Exon57510   282   II: 7601289-7601570 Caenorhabditis elegans
Exon57515   443   II: 7601619-7602061 Caenorhabditis elegans
Exon57520   112   II: 7602106-7602217 Caenorhabditis elegans
Exon57525   461   II: 7602265-7602725 Caenorhabditis elegans
Exon57530   105   II: 7602770-7602874 Caenorhabditis elegans
Exon57535   499   II: 7602921-7603419 Caenorhabditis elegans
Exon57541   626   II: 7603469-7604094 Caenorhabditis elegans
Exon57545   49   II: 7604142-7604190 Caenorhabditis elegans
Exon57551   237   II: 7605572-7605808 Caenorhabditis elegans
Exon57555   214   II: 7605857-7606070 Caenorhabditis elegans
Exon57559   114   II: 7606116-7606229 Caenorhabditis elegans
Exon57564   257   II: 7606280-7606536 Caenorhabditis elegans
Exon57567   136   II: 7606590-7606725 Caenorhabditis elegans
Exon57571   159   II: 7606771-7606929 Caenorhabditis elegans
Exon57575   390   II: 7606976-7607365 Caenorhabditis elegans
Exon57579   229   II: 7607410-7607638 Caenorhabditis elegans
Exon57588   330   II: 7607687-7608016 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07G3.3a.1 7599657 7608016 1

1 Sequence

Length
6085

1 Sequence Ontology Term

Identifier Name Description
transcript