WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R153.1e.1 Sequence Name  R153.1e.1
Length (nt)  3172   Chromosome Location  II: 7627250-7651246
Chromosome . Primary Identifier  II Chromosome Location . Start  7627250
Chromosome Location . End  7651246 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R153.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020114 pde-4 R153.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R153.1e R153.1e 1839   II: 7628064-7628240

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R153.1e.1 7627250 7651246 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57629   991   II: 7627250-7628240 Caenorhabditis elegans
Exon57641   183   II: 7628352-7628534 Caenorhabditis elegans
Exon57649   123   II: 7628587-7628709 Caenorhabditis elegans
Exon57657   155   II: 7628928-7629082 Caenorhabditis elegans
Exon57665   100   II: 7629491-7629590 Caenorhabditis elegans
Exon57673   423   II: 7629642-7630064 Caenorhabditis elegans
Exon57681   141   II: 7630883-7631023 Caenorhabditis elegans
Exon57689   77   II: 7632258-7632334 Caenorhabditis elegans
Exon57697   103   II: 7632752-7632854 Caenorhabditis elegans
Exon57706   94   II: 7633705-7633798 Caenorhabditis elegans
Exon57715   177   II: 7641624-7641800 Caenorhabditis elegans
Exon57723   99   II: 7649789-7649887 Caenorhabditis elegans
Exon57730   506   II: 7650741-7651246 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R153.1e.1 7627250 7651246 -1

1 Sequence

Length
3172

1 Sequence Ontology Term

Identifier Name Description
transcript