WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R153.1c.1 Sequence Name  R153.1c.1
Length (nt)  1927   Chromosome Location  II: 7628064-7643155
Chromosome . Primary Identifier  II Chromosome Location . Start  7628064
Chromosome Location . End  7643155 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R153.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020114 pde-4 R153.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R153.1c R153.1c 1800   II: 7628064-7628240

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R153.1c.1 7628064 7643155 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57632   177   II: 7628064-7628240 Caenorhabditis elegans
Exon57639   183   II: 7628352-7628534 Caenorhabditis elegans
Exon57647   123   II: 7628587-7628709 Caenorhabditis elegans
Exon57655   155   II: 7628928-7629082 Caenorhabditis elegans
Exon57663   100   II: 7629491-7629590 Caenorhabditis elegans
Exon57671   423   II: 7629642-7630064 Caenorhabditis elegans
Exon57679   141   II: 7630883-7631023 Caenorhabditis elegans
Exon57687   77   II: 7632258-7632334 Caenorhabditis elegans
Exon57695   103   II: 7632752-7632854 Caenorhabditis elegans
Exon57704   94   II: 7633705-7633798 Caenorhabditis elegans
Exon57714   177   II: 7641624-7641800 Caenorhabditis elegans
Exon57720   174   II: 7642982-7643155 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R153.1c.1 7628064 7643155 -1

1 Sequence

Length
1927

1 Sequence Ontology Term

Identifier Name Description
transcript