WormMine: Gene WBGene00199606

• WormBase Gene ID: WBGene00199606
• Gene Name: T05A6.15
• Sequence Name: T05A6.15
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in anchor cell based on RNA-seq studies. Is affected by cep-1 and let-418 based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 207

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00199606

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T05A6.15	T05A6.15	207	II: 7809203-7809409

Other

0 CDSs

0 RNAi Result

8 Allele

• gk963801
• gk963053
• gk962682
• WBVar01308224
• gk659118
• gk731414
• WBVar01241768
• gk365622

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00199606
• Start: 7809203
• End: 7809409
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_7809410..7811239
• Length (nt): 1830
• Chromosome Location: II: 7809410-7811239
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in 100-cell stage embryo of let-418(RNAi) animals, comparing to in control RNAi (with gfp control vector) animals.	DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively.	WBPaper00050163:let-418(RNAi)_downregulated_100-cell-embryo
	Transcripts enriched in invading anchor cells comparing to in whole animal.	DESeq2v.1.30.1. fold change >= 2, FDR < 0.05	WBPaper00065258:anchor-cell_enriched
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 after UV irradiation, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_UV

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00199606
• Start: 7809203
• End: 7809409
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 207

1 Sequence Ontology Term