WormMine: Gene WBGene00219605

• WormBase Gene ID: WBGene00219605
• Gene Name: linc-110
• Sequence Name: T09A5.22
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including etr-1; mrps-5; and xrep-4 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: II :0.577574±
• Length (nt): 5054

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219605

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T09A5.22	T09A5.22	2959	II: 7836075-7841128

Other

0 CDSs

1 RNAi Result

• WBRNAi00010622

69 Allele

• gk963801
• gk963053
• gk962682
• gk584406
• WBVar01241792
• gk147712
• WBVar01695648
• WBVar01604211
• WBVar01438588
• WBVar01438590
• gk961386
• gk941933
• gk582219
• gk429619
• gk406735
• gk617743
• gk620476
• gk444766
• gk338742
• WBVar01989184
• gk358592
• gk648102
• gk934614
• gk849323
• gk660402
• gk333635
• gk451971
• gk482395
• gk754278
• gk767041

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219605
• Start: 7836075
• End: 7841128
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_7835415..7836074
• Length (nt): 660
• Chromosome Location: II: 7835415-7836074
• Organism: Caenorhabditis elegans

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in xrep-4(lax137).	DESeq2. Genes were selected if their p value < 0.01.	WBPaper00066062:xrep-4(lax137)_upregulated
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that showed significantly depleted expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_depleted
	Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
	Transcripts that showed significantly decreased expression in unc-30(ok613) animals at L4 larva stage, comparing to N2 animals.	Genes exhibiting at least two-fold change were considered differentially expressed.	WBPaper00061439:unc-30(ok613)_downregulated
	Transcripts that showed significantly increased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector.	Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant.	WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
	Transcripts of noncoding genes that showed significantly increased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_enriched_noncoding-RNA
	Transcripts that showed significantly decreased expression in etr-1(lq61) comparing to in N2 animals at L1 larva stage.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:etr-1(lq61)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219605
• Start: 7836075
• End: 7841128
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 5054

1 Sequence Ontology Term