WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09A5.2d.1 Sequence Name  T09A5.2d.1
Length (nt)  2053   Chromosome Location  II: 7842353-7845653
Chromosome . Primary Identifier  II Chromosome Location . Start  7842353
Chromosome Location . End  7845653 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09A5.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002216 klp-3 T09A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09A5.2d T09A5.2d 1719   II: 7842417-7842473

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09A5.2d.1 7842353 7845653 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon58385   121   II: 7842353-7842473 Caenorhabditis elegans
Exon58391   139   II: 7842650-7842788 Caenorhabditis elegans
Exon58395   157   II: 7843325-7843481 Caenorhabditis elegans
Exon58399   299   II: 7843643-7843941 Caenorhabditis elegans
Exon58403   287   II: 7844034-7844320 Caenorhabditis elegans
Exon58407   131   II: 7844369-7844499 Caenorhabditis elegans
Exon58411   142   II: 7844547-7844688 Caenorhabditis elegans
Exon58415   103   II: 7844732-7844834 Caenorhabditis elegans
Exon58419   198   II: 7844885-7845082 Caenorhabditis elegans
Exon58423   101   II: 7845131-7845231 Caenorhabditis elegans
Exon58427   375   II: 7845279-7845653 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09A5.2d.1 7842353 7845653 1

1 Sequence

Length
2053

1 Sequence Ontology Term

Identifier Name Description
transcript