WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01H3.3.1 Sequence Name  T01H3.3.1
Length (nt)  2172   Chromosome Location  II: 7870881-7873893
Chromosome . Primary Identifier  II Chromosome Location . Start  7870881
Chromosome Location . End  7873893 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01H3.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011349 T01H3.3 T01H3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01H3.3 T01H3.3 1851   II: 7871185-7871321

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01H3.3.1 7870881 7873893 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon58522   441   II: 7870881-7871321 Caenorhabditis elegans
Exon58523   86   II: 7871369-7871454 Caenorhabditis elegans
Exon58524   183   II: 7871523-7871705 Caenorhabditis elegans
Exon58525   149   II: 7871756-7871904 Caenorhabditis elegans
Exon58526   204   II: 7871952-7872155 Caenorhabditis elegans
Exon58527   88   II: 7872202-7872289 Caenorhabditis elegans
Exon58528   110   II: 7872340-7872449 Caenorhabditis elegans
Exon58529   143   II: 7872799-7872941 Caenorhabditis elegans
Exon58530   185   II: 7872992-7873176 Caenorhabditis elegans
Exon58531   94   II: 7873222-7873315 Caenorhabditis elegans
Exon58532   273   II: 7873362-7873634 Caenorhabditis elegans
Exon58533   216   II: 7873678-7873893 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01H3.3.1 7870881 7873893 -1

1 Sequence

Length
2172

1 Sequence Ontology Term

Identifier Name Description
transcript