WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F10B5.7.1 Sequence Name  F10B5.7.1
Length (nt)  5530   Chromosome Location  II: 8162465-8168651
Chromosome . Primary Identifier  II Chromosome Location . Start  8162465
Chromosome Location . End  8168651 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F10B5.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004510 rrf-3 F10B5.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F10B5.7 F10B5.7 5298   II: 8162558-8162625

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F10B5.7.1 8162465 8168651 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon59331   161   II: 8162465-8162625 Caenorhabditis elegans
Exon59332   610   II: 8162681-8163290 Caenorhabditis elegans
Exon59333   236   II: 8163337-8163572 Caenorhabditis elegans
Exon59334   114   II: 8163620-8163733 Caenorhabditis elegans
Exon59335   358   II: 8163784-8164141 Caenorhabditis elegans
Exon59336   820   II: 8164187-8165006 Caenorhabditis elegans
Exon59337   272   II: 8165054-8165325 Caenorhabditis elegans
Exon59338   242   II: 8165371-8165612 Caenorhabditis elegans
Exon59339   212   II: 8165655-8165866 Caenorhabditis elegans
Exon59340   688   II: 8165913-8166600 Caenorhabditis elegans
Exon59341   724   II: 8166649-8167372 Caenorhabditis elegans
Exon59342   458   II: 8167417-8167874 Caenorhabditis elegans
Exon59343   106   II: 8167920-8168025 Caenorhabditis elegans
Exon59344   192   II: 8168077-8168268 Caenorhabditis elegans
Exon59345   337   II: 8168315-8168651 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F10B5.7.1 8162465 8168651 1

1 Sequence

Length
5530

1 Sequence Ontology Term

Identifier Name Description
transcript