WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13H5.1e.1 Sequence Name  T13H5.1e.1
Length (nt)  2495   Chromosome Location  II: 8487570-8499761
Chromosome . Primary Identifier  II Chromosome Location . Start  8487570
Chromosome Location . End  8499761 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13H5.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011755 T13H5.1 T13H5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13H5.1e T13H5.1e 2118   II: 8487947-8488027

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13H5.1e.1 8487570 8499761 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60380   458   II: 8487570-8488027 Caenorhabditis elegans
Exon60392   159   II: 8488126-8488284 Caenorhabditis elegans
Exon60402   136   II: 8488336-8488471 Caenorhabditis elegans
Exon60412   134   II: 8488520-8488653 Caenorhabditis elegans
Exon60423   84   II: 8488801-8488884 Caenorhabditis elegans
Exon60433   120   II: 8490741-8490860 Caenorhabditis elegans
Exon60442   138   II: 8491163-8491300 Caenorhabditis elegans
Exon60451   74   II: 8491369-8491442 Caenorhabditis elegans
Exon60460   100   II: 8491489-8491588 Caenorhabditis elegans
Exon60469   117   II: 8492093-8492209 Caenorhabditis elegans
Exon60478   172   II: 8492459-8492630 Caenorhabditis elegans
Exon60502   281   II: 8495721-8496001 Caenorhabditis elegans
Exon60511   138   II: 8496050-8496187 Caenorhabditis elegans
Exon60520   90   II: 8496889-8496978 Caenorhabditis elegans
Exon60529   78   II: 8497055-8497132 Caenorhabditis elegans
Exon60538   116   II: 8497520-8497635 Caenorhabditis elegans
Exon60544   100   II: 8499662-8499761 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13H5.1e.1 8487570 8499761 -1

1 Sequence

Length
2495

1 Sequence Ontology Term

Identifier Name Description
transcript