WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T13H5.1c.1 Sequence Name  T13H5.1c.1
Length (nt)  3058   Chromosome Location  II: 8487574-8509055
Chromosome . Primary Identifier  II Chromosome Location . Start  8487574
Chromosome Location . End  8509055 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T13H5.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011755 T13H5.1 T13H5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T13H5.1c T13H5.1c 2595   II: 8487947-8488027

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T13H5.1c.1 8487574 8509055 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60381   454   II: 8487574-8488027 Caenorhabditis elegans
Exon60390   159   II: 8488126-8488284 Caenorhabditis elegans
Exon60400   136   II: 8488336-8488471 Caenorhabditis elegans
Exon60410   134   II: 8488520-8488653 Caenorhabditis elegans
Exon60421   84   II: 8488801-8488884 Caenorhabditis elegans
Exon60428   57   II: 8489672-8489728 Caenorhabditis elegans
Exon60431   120   II: 8490741-8490860 Caenorhabditis elegans
Exon60440   138   II: 8491163-8491300 Caenorhabditis elegans
Exon60449   74   II: 8491369-8491442 Caenorhabditis elegans
Exon60458   100   II: 8491489-8491588 Caenorhabditis elegans
Exon60467   117   II: 8492093-8492209 Caenorhabditis elegans
Exon60476   172   II: 8492459-8492630 Caenorhabditis elegans
Exon60500   281   II: 8495721-8496001 Caenorhabditis elegans
Exon60509   138   II: 8496050-8496187 Caenorhabditis elegans
Exon60518   90   II: 8496889-8496978 Caenorhabditis elegans
Exon60527   78   II: 8497055-8497132 Caenorhabditis elegans
Exon60536   116   II: 8497520-8497635 Caenorhabditis elegans
Exon60549   47   II: 8506486-8506532 Caenorhabditis elegans
Exon60555   74   II: 8506577-8506650 Caenorhabditis elegans
Exon60560   60   II: 8507056-8507115 Caenorhabditis elegans
Exon60563   120   II: 8507209-8507328 Caenorhabditis elegans
Exon60567   113   II: 8507375-8507487 Caenorhabditis elegans
Exon60569   99   II: 8508768-8508866 Caenorhabditis elegans
Exon60570   97   II: 8508959-8509055 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T13H5.1c.1 8487574 8509055 -1

1 Sequence

Length
3058

1 Sequence Ontology Term

Identifier Name Description
transcript