WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W01C9.3a.1 Sequence Name  W01C9.3a.1
Length (nt)  2668   Chromosome Location  II: 8540715-8545393
Chromosome . Primary Identifier  II Chromosome Location . Start  8540715
Chromosome Location . End  8545393 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W01C9.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004155 pqn-73 W01C9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W01C9.3a W01C9.3a 2421   II: 8540720-8540783

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W01C9.3a.1 8540715 8545393 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60638   69   II: 8540715-8540783 Caenorhabditis elegans
Exon60640   75   II: 8541609-8541683 Caenorhabditis elegans
Exon60644   80   II: 8541762-8541841 Caenorhabditis elegans
Exon60648   105   II: 8541901-8542005 Caenorhabditis elegans
Exon60654   242   II: 8542259-8542500 Caenorhabditis elegans
Exon60658   265   II: 8542742-8543006 Caenorhabditis elegans
Exon60662   204   II: 8543051-8543254 Caenorhabditis elegans
Exon60666   82   II: 8543372-8543453 Caenorhabditis elegans
Exon60670   695   II: 8543549-8544243 Caenorhabditis elegans
Exon60674   47   II: 8544291-8544337 Caenorhabditis elegans
Exon60678   99   II: 8544382-8544480 Caenorhabditis elegans
Exon60682   114   II: 8544528-8544641 Caenorhabditis elegans
Exon60686   214   II: 8544694-8544907 Caenorhabditis elegans
Exon60690   110   II: 8544959-8545068 Caenorhabditis elegans
Exon60697   267   II: 8545127-8545393 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W01C9.3a.1 8540715 8545393 1

1 Sequence

Length
2668

1 Sequence Ontology Term

Identifier Name Description
transcript